PI Publications
- 2023Crizotinib induces Par-4 secretion from normal cells and GRP78 expression on the cancer cell surface for selective tumor growth inhibition. American Journal of Cancer Research. 13(3):976-991.
Burikhanov R, Ganguly S, Ellingson S, Sviripa VM, Araujo N, Li S, Venkatraman P, Rao M, Choughule A, Brainson CF, Zhan CG, Spielmann HP, Watt DS, Govindan R, Rangnekar VM
The interaction network of the proteasome assembly chaperone PSMD9 regulates proteostasis. FEBS Journal.Christie J, Anthony CM, Harish M, Mudartha D, Farooqee SBUD, Venkatraman P
- 2022A crystal form of PSMD10Gankyrin with channels accessible to small molecules. Current Science, 122, 6:674-681 (2022).
Mukund Sudharsan, M. G, Prasanna Venkatraman
A druggable pocket on PSMD10Gankyrin that can accommodate an interface peptide and doxorubicin. European Journal of Pharmacology, 915, 174718 (2022).Mukund Sudharsan MG, Rupesh Chikhale, Padma P. Nanaware, Somavally Dalvi, Prasanna Venkatraman
Structural insights on the effects of mutation of a charged binding pocket residue on phosphopeptide binding to 14-3-3ζ protein. Proteins: Structure, Function, and Bioinformatics. 90(5): 1179-1189. PMID: 35006623.Sreevidya TS, Dalvi S, Venkatraman P, Vemparala S
Snapshots of urea-induced early structural changes and unfolding of an ankyrin repeat protein at atomic resolution. Protein Science.Mukund Sudharsan MG, Dalvi S, Venkatraman P
- 2021The polybasic insert, the RBD of the SARS-CoV-2 spike protein, and the feline coronavirus – evolved or yet to evolve. Biochemistry and Biophysics Reports. 25: 10907
Budhraja A, Pandey S, Kannan S, Verma CS, Venkatraman P (2021)
14-3-3γ prevents centrosome duplication by inhibiting NPM1 function. Genes to Cells. 26(6):426-446. PMID: 33813791Bose A, Modi K, Dey S, Dalvi S, Nadkarni P, Sudarshan M, Kundu TK, Venkatraman P, Dalal SN
Evolution of biophysical tools for quantitative protein interactions and drug discovery. Emerging Topics in Life Sciences. 5(1):1-12. PMID: 33739398Harish M, Venkatraman P
Value added by an inter-continental cancer consortium. Genes and Cancer 12: 65-68. PMID: 34046148Rao M, Venkatraman P , Mukhopadhyay D, Roychoudhury S, Vanderford NL, Rangnekar VM
PSMD9 ribosomal protein network maintains nucleolar architecture and WT p53 levels, Biochemical and Biophysical Research Communications, 2021, https://doi.org/10.1016/j.bbrc.2021.05.004.Sheikh Burhan Ud Din Farooqee, Joel Christie, Prasanna Venkatraman
- 2020Prion protein transcription is auto-regulated through dynamic interactions with G-quadruplex motifs in its own promoter. Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms. PMID: 31931179
Pradhan P, Srivastava A, Singh J, Biswas B, Saini A, Siddique I, Kumari P, Khan MA, Mishra A, Yadav PK, Kumar S, Bhavesh NS, Venkatraman P, Vivekanandan P, Kundu B
- 2019A Novel Determinant of PSMD9 PDZ Binding Guides the Evolution of the First Generation of Super Binding Peptides. Biochemistry. 58(32): 3422-3433, 2019. PMID: 31287951.
Harish M, Kannan S, Puttagunta S, Pradhan MR, Verma CS, Venkatraman P
Role of a 19S Proteasome Subunit- PSMD10(Gankyrin) in Neurogenesis of Human Neural Progenitor Cells. Int J Stem Cells. 12(3):463-473, 2019. PMID: 31474027Sahu I, Nanaware P, Mane M, Mulla SW, Roy S, Venkatraman P
Two negatively charged invariant residues influence ligand binding and conformational dynamics of 14-3-3ζ. FEBS Lett. 2019. PMID: 31693753.Modi K, Dalvi S, Venkatraman P
Functional Significance Checking in Noisy Gene Regulatory Networks. In: Schiex T., de Givry S. (eds) Principles and Practice of Constraint Programming. CP 2019. Lecture Notes in Computer Science, vol 11802. Springer, Cham.Akshay S, Basu S, Chakraborty S, Sundararajan R, Venkatraman P
- 2018Enhanced proteasomal activity is essential for long term survival and recurrence of innately radiation resistant residual glioblastoma cells. Oncotarget. 9(45): 27667-27681, 2018. PMID: 29963228
Rajendra J, Datta KK, Ud Din Farooqee SB, Thorat R, Kumar K, Gardi N, Kaur E, Nair J, Salunkhe S, Patkar K, Desai S, Goda JS, Moiyadi A, Dutt A, Venkatraman P, Gowda H, Dutt S
Phosphorylation promotes binding affinity of Rap-Raf complex by allosteric modulation of switch loop dynamics. Sci Rep. 2018 8(1):12976, 2018Devanand T, Venkatraman P, Vemparala S
- 2016
- 2015DLS and its applications in structural biology of proteins. Spinco Biotech Cutting Edge. PP. 42-45, November 2015.
Mahalakshi Harish, Venkatraman P.
- 2014Discovery of Novel Interacting Partners of PSMD9 a Proteasomal Chaperone -Role of an Unusual and Versatile PDZ-Domain Motif Interaction and Identification of Putative Functional Modules. Accepted Febs Open Bio May 2014.
Nikhil Sangith, Kannan Srinivasaraghavan, Indrajit Sahu, Ankita Desai, Spandana Medipally, Arun K Somavarappu, Chandra Verma, Prasanna Venkatraman.
A novel role for the Proteasomal Chaperone PSMD9 and hnRNPA1 in enhancing I?B? degradation and NF-?B activation - Functional Relevance of predicted PDZ domain-motif interaction.FEBS J. 2014 Apr 10. doi: 10.1111/febs.12814Sahu I, Sangith N, Ramteke M, Gadre R, Venkatraman P
Structural Interrogation of Phosphoproteome Identified by Mass Spectrometry Reveals Allowed and Disallowed Regions of Phosphoconformation. BMC Struct Biol. 2014 Mar 11;14(1):9. doi: 10.1186/1472-6807-14-9.Arun Kumar Somavarapu, Satish Balakrishnan, Amit Kumar S Gautam, David S Palmer and Prasanna Venkatraman.
- 2013Discovery of multiple interacting partners of gankyrin, a proteasomal chaperone and an oncoprotein -Evidence for a common hot spot site at the interface and its functional relevance.Proteins. 2013 Dec 13. doi: 10.1002/prot.24494.
Nanaware P, Ramteke M, Somavarapu AK, Venkatraman P
Identification of a novel ATPase activity in 14-3-3 proteins - Evidence from enzyme kinetics, structure guided modeling and mutagenesis studies.FEBS Lett. 2013 Nov 20. pii: S0014-5793(13)00842-9. doi: 10.1016/j.febslet.2013.11.008Ramteke MP, Shelke P, Ramamoorthy V, Somavarapu AK, Gautam AK, Nanaware PP, Karanam S, Mukhopadhyay S, Venkatraman P
- 2012From Prediction to Experimental Validation-Desmoglein 2 is a Functionally Relevant Substrate of Matriptase in Epithelial Cells and their Reciprocal Relationship is Important for Cell Adhesion.. Biochem J. 2012 Jul 11. [Epub ahead of print] PMID: 22783993
Wadhawan V, Kolhe YA, Sangith N, Gautam AK, Venkatraman P
Direct ubiquitin independent recognition and degradation of a folded protein by the eukaryotic proteasomes-origin of intrinsic degradation signals. PLoS One. 2012;7(4):e34864.Singh Gautam AK, Balakrishnan S, Venkatraman P.
Cathepsins L and Z Are Critical in Degrading Polyglutamine-containing Proteins within Lysosomes. J Biol Chem. 2012; 287(21):17471-82.Bhutani N, Piccirillo R, Hourez R, Venkatraman P, Goldberg AL
- 2010Sum-Based Meta-Analytical Enrichment of Gene Expression Data to Identify Pathway Signatures of Cancers. Journal of Cancer Therapy, 2010
Kavishwar Wagholikar, Prasanna Venkatraman, Sundararajan Vijayraghavan, Chandan Kumar-Sinha
- 2009A Sequence and Structure Based Method to Predict Putative Substrates, Functions and Regulatory Networks of Endo Proteases. PLoS One, 2009
Prasanna Venkatraman, Satish Balakrishnan, Shashidhar Rao, Yogesh Hooda and Suyog Pol
A novel pocket in 14-3-3e is required to mediate specific complex formation with cdc25C and to inhibit cell cycle progression upon activation of checkpoint pathways. Exp Cell Res. 2009 Jan 30.Telles E, Hosing AS, Kundu ST, Venkatraman P, Dalal SN.
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